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ga4gh

A reference implementation of the GA4GH API

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

edge-genome

Efficiently keep track of changes to genomes

kegganog

🤝 Tool for mining KEGG pathways completeness data from eggNOG-mapper annotations

bricks2marble

Pre- and postprocessing tools for genome annotation.

plastburstalign

A Python tool to extract and align genes, introns, and intergenic spacers across thousands of plastid genomes using associative arrays

funannotate

funannotate: eukaryotic genome annotation pipeline

peaks2utr

A robust Python tool for the annotation of 3’ UTRs

lifton

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

tigre

TIGRE is a Python CLI for large scale extraction of intergenic regions.

pybarrnap

Python implementation of barrnap (Bacterial ribosomal RNA predictor)

gdt

Gene Dictionary Tool - Bioinformatics package

aegis-bio

Annotation Extraction Genomic Integration Suite.

txdb

Access TxDB Annotation objects

sismis

Secretion system discovery tool.

orgdb

Access OrgDb Annotation objects

ga4gh-server

Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24