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compbiol
camsa

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

3K 25 5
fedarko
pyfastg

A minimal Python library for parsing FASTG files

1K 8 0
adamtaranto
teloclip

A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

1K 51 4
malonge
ragtag

Tools for fast and flexible genome assembly scaffolding and improvement

807 564 56
kishwarshafin
helen

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

682 73 12
koszullab
instagraal

Large genome reassembly based on Hi-C data, continuation of GRAAL

662 43 10
siddhijain25
rsidbuildtranslator

A tool for adding genomic IDs - rsIDS, or chromosome and positions from GRCh37 or GRCh38

581 0 0
shandley
chromdetect

Detect chromosome-level scaffolds in genome assemblies with inconsistent naming conventions

466 0 0
marbl
metagenomescope

Visualization tool for (meta)genome assembly graphs

269 47 9
lpryszcz
redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

258 177 22
hunglin59638
makura

NCBI Genome downloader

251 0 0
linxingchen
cobra-meta

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

206 82 11
neherlab
pypangraph

A bioinformatic toolkit to align genome assemblies into pangenome graphs

196 124 6
pgrady1322
strandweaver

AI-Powered Multi-Technology Genome Assembler with GPU Acceleration

80 3 1
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