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GenomicMedLab
wags-tails

Data acquisition tools for Wagnerds

6K 1 0
HallLab
pandas-genomics

Pandas ExtensionDtypes for dealing with genomics data

1K 48 8
ML-Bioinfo-CEITEC
genomic-benchmarks

Genomic Benchmarks

779 173 24
remytuyeras
haplodynamics

A python library to develop genomic data simulators

526 4 0
IPK-BIT
divbrowse

A web application for interactive visualization and exploratory data analysis of variant call matrices

302 21 3
histolab
gdc-api-wrapper

Genomic Data Commons API wrapper

242 8 0
jolespin
compositional

Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualizations.

209 28 0
outbreak-info
python-outbreak-info

Python package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info

182 6 2
danymukesha
ensembl-variant-lookup

Python tool built for a user-friendly interface for searching individual variants, batch queries, and exploring gene regions from the Ensembl database.

181 0 0
Rajkanwars15
bioquik

Fast FM-index toolkit for CG-anchored DNA motif counting in FASTA files with parallel processing and optional visualization.

143 2 0
ReddyLab
ggr-cwl-ipynb-gen

Jupyter notebook generator to download and execute the processing files for GGR related datasets

114 0 6
outbreak-info
python-outbreak-data

Python package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info

1 6 2
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