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pandas-plink

PLINK reader for Python.

lineage

tools for analyzing and exploring genetic relationships

magenpy

Modeling and Analysis of Statistical Genetics data in python

pypgx

A Python package for pharmacogenomics (PGx) research

aldy

A tool for allelic decomposition (haplotype reconstruction) and exact genotyping of highly polymorphic and structurally variant genes

snpmatch

A simple python library to identify the most likely strain from the population

the-real-genotools

GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.

mgatk

Mitochondrial genome analysis toolkit.

gennet-forked

Framework for Interpretable Neural Networks

svtyper

Bayesian genotyper for structural variants

sv2

Support Vector Structural Variation Genotyper

ideal-genom-qc

Package perform a variety of genomic analysis

plink-bed-reader

Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in pure Python.

ideal-genom

Package to performa a variety of genomic analysis