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limix
pandas-plink

PLINK reader for Python.

22K 89 23
apriha
lineage

tools for analyzing and exploring genetic relationships

3K 175 28
shz9
magenpy

Modeling and Analysis of Statistical Genetics data in python

2K 18 5
sbslee
pypgx

A Python package for pharmacogenomics (PGx) research

1K 88 19
inumanag
aldy

A tool for allelic decomposition (haplotype reconstruction) and exact genotyping of highly polymorphic and structurally variant genes

1K 70 23
Gregor-Mendel-Institute
snpmatch

A simple python library to identify the most likely strain from the population

755 10 5
dvitale199
the-real-genotools

GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.

434 35 8
caleblareau
mgatk

Mitochondrial genome analysis toolkit.

411 111 29
ArnovanHilten
gennet-forked

Framework for Interpretable Neural Networks

328 116 18
hall-lab
svtyper

Bayesian genotyper for structural variants

262 136 57
dantaki
sv2

Support Vector Structural Variation Genotyper

243 59 9
cge-tubingens
ideal-genom-qc

Package perform a variety of genomic analysis

154 1 1
Computational-Genomics-BSC
plink-bed-reader

Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in pure Python.

150 3 0
LuisGiraldo86
ideal-genom

Package to performa a variety of genomic analysis

150 0 0
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