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circle-map

A method for circular DNA detection based on probabilistic mapping of ultrashort reads

snpmatch

A simple python library to identify the most likely strain from the population

indelpost

Python library for simple and complex indels

amira-amr

A tool to detect acquired AMR genes directly from long read sequencing data.

tblg

A command-line tool to genotype Mycobacterium tuberculosis lineage from a VCF file

massgenotyping

Python package for microsatellite genotyping from amplicon sequencing data

cellsnp

Pileup biallelic SNPs from single-cell and bulk RNA-seq data

iscanvcfmerge

Python tool to merge cross-species Illumina iScan genotype data with a reference set of genotypes from a pre-existing source.