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sanger-pathogens
pyfastaq

Python3 scripts to manipulate FASTA and FASTQ files

3K 73 21
sanger-pathogens
ariba

ARIBA: Antibiotic Resistance Identification By Assembly

1K 187 60
sanger-pathogens
circlator

A tool to circularize genome assemblies

433 255 57
sanger-pathogens
iva

Iterative Virus Assembler

326 58 19
andrewjpage
tiptoft

Predict plasmids from uncorrected long read data

207 41 10
quadram-institute-bioscience
albatradis

Comparative TraDIS analysis

163 9 4
sanger-pathogens
seroba

SEROBA: Serotyping for illumina reads

87 25 20
andrewjpage
plasmidpredictor

plasmidpredictor: predict which plasmid should be present from uncorrected long read data

79 41 10
openemr
openemr-agent

The most popular open source electronic health records and medical practice management solution.

75 5K 3K