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h5netcdf
h5netcdf

Pythonic interface to netCDF4 via h5py

5.5M 227 39
p2p-ld
numpydantic

Type annotations for specifying, validating, and serializing arrays with arbitrary backends in Pydantic (and beyond)

383K 140 5
hdmf-dev
hdmf

The Hierarchical Data Modeling Framework

341K 56 27
scikit-hep
awkward0

Manipulate arrays of complex data structures as easily as Numpy.

331K 214 39
NeurodataWithoutBorders
pynwb

A Python API for working with Neurodata stored in the NWB Format

306K 214 93
silx-kit
h5grove

h5grove is a Python package that provides utilities to design backends serving HDF5 file content: attributes, metadata and data.

101K 24 10
silx-kit
silx

silx toolkit

99K 160 80
openPMD
openpmd-api

:floppy_disk: C++ & Python API for Scientific I/O

49K 154 55
saulpw
visidata

A terminal spreadsheet multitool for discovering and arranging data

35K 9K 345
scipp
scippnexus

h5py-like utility for NeXus files with seamless scipp integration

18K 6 4
open2c
cooler

A cool place to store your Hi-C

17K 237 60
ywatanabe1989
scitex-io

Universal scientific data I/O with plugin registry — save/load 30+ formats with one API. Part of SciTeX.

17K 0 0
uchicago-cs
deepdish

Flexible HDF5 saving/loading and other data science tools from the University of Chicago

16K 273 65
legend-exp
legend-pydataobj

LEGEND Python Data Objects

13K 1 13
silx-kit
jupyterlab-h5web

A JupyterLab extension to explore and visualize HDF5 file contents. Based on https://github.com/silx-kit/h5web.

11K 87 11
SWIFTSIM
swiftsimio

Python library for reading SWIFT data. Uses unyt and h5py.

10K 28 18
prjemian
spec2nexus

Converts SPEC data files and scans into NeXus HDF5 files

9K 4 7
ornladios
adios2

Next generation of ADIOS developed in the Exascale Computing Program

9K 319 148
nexdatas
nxstools

NeXus command-line tools for setting NeXus tango servers and preparing their configurtation

8K 0 1
ubermag
discretisedfield

Python package for the analysis and visualisation of finite-difference fields.

6K 19 14
nens
threedigrid

grid administration for 3Di models

4K 9 1
kchemorion
pyfieldml

A modern pure-Python implementation of FieldML 0.5: full evaluation engine, interop bridges (meshio/PyVista/XDMF/scikit-fem), curated biomechanics model zoo

4K 0 0
h5io
h5io-browser

Easy navigation and data storage for HDF5

4K 2 3
pyCGNS
pycgns

A Python package for CGNS

4K 49 19
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