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scverse
scvi-tools

Deep probabilistic analysis of single-cell and spatial omics data

77K 2K 447
theislab
scarches

Reference mapping for single-cell genomics

3K 404 70
YosefLab
scvi

Deep probabilistic analysis of single-cell and spatial omics data

2K 2K 447
spacetx
starfish

starfish: unified pipelines for image-based transcriptomics

2K 247 70
lasersonlab
zappy

Distributed processing with NumPy and Zarr

747 9 2
broadinstitute
single-cell-portal

Convenience scripts for Single Cell Portal

216 51 25
Teichlab
genes2genes

A tool for aligning gene expression trajectories of single-cell reference and query systems

121 87 13
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