Search Packages

sequali

Fast sequencing data quality metrics

s4-clarity

A modern Python library for BaseSpace Clarity LIMS.

sample-sheet

Parse Illumina sample sheets with Python

mepylome

Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files

aldy

A tool for allelic decomposition (haplotype reconstruction) and exact genotyping of highly polymorphic and structurally variant genes

pylluminator

Python package for processing and analyzing Illumina DNA methylation data

ampligone

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

assnake

System for metagenomics data analysis

monte-barcode

Generating sets of random DNA sequences optimized for use in high-throughput sequencing.

arvia

ARVIA (Antibiotic Resistance Variant Identifier for Pseudomonas aeruginosa) takes single-end/paired-end reads and/or assemblies to perform exhaustive variant calling of genes related to antibiotic resistance in Pseudomonas aeruginosa.

iscanvcfmerge

Python tool to merge cross-species Illumina iScan genotype data with a reference set of genotypes from a pre-existing source.

pylluminator-modern

Tool to preprocess, analyze and visualize DNA methylation data from Illumina micro-arrays