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spatial-image
multiscale-spatial-image

Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.

82K 55 9
InsightSoftwareConsortium
itkwasm

High performance spatial analysis in a web browser and across programming languages and hardware architectures

31K 228 58
thewtex
ngff-zarr

A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

27K 69 18
InsightSoftwareConsortium
itkwasm-downsample

High performance spatial analysis in a web browser and across programming languages and hardware architectures

22K 228 58
InsightSoftwareConsortium
itkwasm-downsample-wasi

High performance spatial analysis in a web browser and across programming languages and hardware architectures

22K 228 58
InsightSoftwareConsortium
itkwidgets

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

20K 622 82
PyAbel
pyabel

A python package for Abel and inverse Abel transforms

9K 103 45
deepinv
deepinv

DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning

7K 724 168
JaneliaSciComp
fileglancer

Browse, share, and publish OME-Zarr data

6K 25 4
brainglobe
cellfinder

Automated 3D cell detection in very large images

6K 226 78
MouseLand
suite2p

cell detection in calcium imaging recordings

5K 445 270
ornlneutronimaging
nereids

NEREIDS (NEutron REsonance Imaging Diagnostic Suite) is a research-grade toolkit for neutron resonance imaging, providing a Rust physics core, Python bindings, and NeXus/HDF5-compliant data I/O, with a path to fast, standalone GUI workflows for VENUS/MARS.

5K 2 0
afermg
cp-measure

Morphological features from images and masks made easy.

5K 46 9
odlgroup
odl

Operator Discretization Library https://odl.readthedocs.io/

4K 430 119
InsightSoftwareConsortium
itkwasm-image-io

High performance spatial analysis in a web browser and across programming languages and hardware architectures

4K 228 58
sim-reconstruction
simtk

Place to build a Python version of the SIM reconstruction code.

4K 6 0
InsightSoftwareConsortium
itkwasm-image-io-wasi

High performance spatial analysis in a web browser and across programming languages and hardware architectures

4K 228 58
InsightSoftwareConsortium
itk-ioscanco

ITK Image IO for Scanco MicroCT .ISQ files

3K 13 15
InsightSoftwareConsortium
itk-ioomezarrngff

ITK IO for images stored in OME-Zarr format.

2K 11 5
spacetx
starfish

starfish: unified pipelines for image-based transcriptomics

2K 247 70
InsightSoftwareConsortium
itk-webassemblyinterface

High performance spatial analysis in a web browser and across programming languages and hardware architectures

2K 228 58
InsightSoftwareConsortium
itk-growcut

ITKGrowCut is a remote module for ITK. It segments a 3D image from user-provided foreground and background seeds.

2K 16 10
KitwareMedical
itk-phasesymmetry

Multi-scale Steerable Phase-Symmetry Filters for ITK

2K 2 10
fluorescence-tools
tttrlib

File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy)

2K 23 3
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