Search Packages

flowio

A Python library for reading and writing Flow Cytometry Standard (FCS) files

lzgraphs

LZ76 Graphs and Applications in Immunology

flowkit

A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

deeptcr

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

tidytcells

Standardise TR/MH/IG data

immunedb

ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data

copepodtcr

COmbinatorial PEptide POoling for TCR specificity

aims-immune

A software for the analysis of immune repertoires

stitchr

Stitch together coding TCR sequences from V/J/CDR3 information

immuno-compass

Generalizable AI predicts immunotherapy outcomes across cancers and treatments

vquest

Automate IMGT V-QUEST usage on imgt.org

sceptr

Fast and performant TCR representation model

pygempick

Open Source python module to enable batch gold particle picking, filtering, processing & statistical modelling of TEM images produced by IGEM (immunogold electron microscopy).

decombinator

Decombinator: fast, error-correcting analysis of TCR repertoires

epitopepredict

Python package for epitope prediction

pybatman

Package for predicting peptide mutation effects on T cell receptor activation.