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sanger-pathogens
pyfastaq

Python3 scripts to manipulate FASTA and FASTQ files

3K 73 21
epispot
epispot-nightly

The nightly version of the epispot package.

2K 18 6
sanger-pathogens
ariba

ARIBA: Antibiotic Resistance Identification By Assembly

1K 187 60
sanger-pathogens
circlator

A tool to circularize genome assemblies

433 255 57
epispot
epispot

A tool for modeling infectious diseases.

328 18 6
sanger-pathogens
iva

Iterative Virus Assembler

326 58 19
andrewjpage
tiptoft

Predict plasmids from uncorrected long read data

207 41 10
nathangeffen
ziggie

Python package for infectious disease modelling

193 1 0
quadram-institute-bioscience
albatradis

Comparative TraDIS analysis

163 9 4
sanger-pathogens
seroba

SEROBA: Serotyping for illumina reads

87 25 20
andrewjpage
plasmidpredictor

plasmidpredictor: predict which plasmid should be present from uncorrected long read data

79 41 10
raghavagps
fluspred

A bioinformatic-ware to predict the zoonotic host tropism of Influenza A virus.

73 3 1