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AMICI-dev
amici

High-performance sensitivity analysis for large ordinary differential equation models

6K 137 33
PySCeS
pysces

The official PySCeS project source code repository.

5K 40 10
markovmodel
pyemma

🚂 Python API for Emma's Markov Model Algorithms 🚂

3K 339 126
biomass-dev
biomass

A Python Framework for Modeling and Analysis of Signaling Systems

1K 29 13
vmspereira
mewpy

Metabolic Engineering Workbench

1K 0 0
SystemsBioinformatics
stochpy

StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks

922 44 11
pasmopy
pasmopy

Patient-Specific Modeling in Python

735 19 7
bowman-lab
enspara

Tools for ensemble modeling

122 37 16
tintin554
multilayerpy

Build, run and optimise kinetic multi-layer models of aerosols and films

72 10 1
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