Search Packages

sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.

smudgeplot

Inference of ploidy and heterozygosity structure using whole genome sequencing data

kcollections

A BloomFilterTrie implementation to be generally applicable for genomic applications.

biosaic

KMer level tokenizer for DNA & Proteins sequences

stringmlst

Fast k-mer based tool for multi locus sequence typing (MLST)

pymer

Fast pythontic k-mer counting routines

kmerhash

Convert python string to hashed kmers and back again

metagenomics-focus

FOCUS: An Agile Profiler for Metagenomic Data

tiptoft

Predict plasmids from uncorrected long read data

plasmidpredictor

plasmidpredictor: predict which plasmid should be present from uncorrected long read data

freqgen

🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies

kman

K-Mer management tools