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konstantint
pyliftover

Pure-python implementation of UCSC liftOver genome coordinate conversion

58K 101 15
jeremymcrae
liftover

liftover for python, made fast with cython

24K 99 6
XiaoTaoWang
hiclift

Convert genomic coordinates of contact pairs from one assembly to another.

1K 78 5
Kuanhao-Chao
lifton

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

604 123 11
baudisgroup
segment-liftover

Lifterover copy number segments in whole

508 24 4
josiahseaman
fluentdna

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

319 69 6
milescsmith
plinkliftover

Perform liftover on plink files

290 5 1
XiaoTaoWang
pairliftover

Convert genomic coordinates of contact pairs from one assembly to another.

288 78 5
billzt
pyoverchain

a python pipeline to generate chain files between different genome assemblies for LiftOver.

123 7 2
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