Search Packages

deepchopper-cli

Genomic Language Model Mitigates Chimera Artifacts in Nanopore Direct RNA Sequencing

strkit

A short tandem repeat (STR) genotyping and analysis toolkit for long reads

dajin2

🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing

deepchopper

Genomic Language Model Mitigates Chimera Artifacts in Nanopore Direct RNA Sequencing

stranger

Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat

midsv

a Python module to translate SAM into MIDSV format.

nanome-jax

NANOME (Nanopore methylation) pipeline developed by Li Lab at The Jackson Laboratory

ultra-bioinformatics

Splice aligner of long transcriptomic reads to genome.

deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

altanalyze3

AltAnalyze3: Advanced RNA-Seq Analysis Workflow

jaffatools

A Python toolkit for JAFFA fusion gene detection