Search Packages

minisom

:red_circle: MiniSom is a minimalistic implementation of the Self Organizing Maps

cellrank

CellRank: dynamics from multi-view single-cell data

phate

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

palantir

Single cell trajectory detection

torchdr

TorchDR - PyTorch Dimensionality Reduction

pytorch-bsf

PyTorch implementation of Bezier simplex fitting

topometry

Tools for single-cell geometric analysis, clustering and visualization.

mlx-vis

Pure MLX implementations of UMAP, t-SNE, PaCMAP, LocalMAP, TriMap, DREAMS, CNE, MMAE, and NNDescent for Apple Silicon. Metal GPU acceleration for both computation and video rendering. No scipy, no sklearn, no matplotlib.

pressio4py

Python bindings to pressio

cub-tools

A set of notebooks as a guide to the process of fine-grained image classification of birds species, using PyTorch based deep neural networks.

dreimac

Dimensionality Reduction with Eilenberg-MacLane Coordinates

snpmanifold

Manifold learning for single-cell single-nucleotide genetic variations

pamona

The software of Pamona, a partial manifold alignment algorithm.

dse-dsmi

Diffusion spectral entropy and diffusion spectral mutual information (https://arxiv.org/abs/2312.04823).

heatgeo

Heat geodesic embeddings

miaaim-python

MIAAIM: Multi-omics Image Alignment and Analysis by Information Manifolds