Search Packages

cobra

COBRApy is a package for constraint-based modeling of metabolic networks.

metevolsim

MetEvolSim (Metabolome Evolution Simulator). A Python package to simulate the long-term evolution of metabolic levels.

psamm

Curation and analysis of metabolic models

mpwt

Pathway Tools multiprocessing wrapper (for PathoLogic).

padmet

Python library for hAndling metaData of METabolism.

corda

Genome-scale model construction with CORDA

efmlrs

Extracts EFMs from result file of mplrs and decompresses EFMs from efmtool and mplrs results that have been compressed with EFMlrs

findcpcore

findCP core package

findcpcli

findCP CLI package - find ChokePoint reactions in genome-scale metabolic models

commmodelpy

Create stoichiometric metabolic network models of single-species or multi-species communities