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althonos
pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

75K 184 10
althonos
pyfastani

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

5K 24 2
althonos
pyskani

PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.

3K 29 2
samstudio8
gretel

An algorithm for recovering haplotypes from metagenomes

284 30 3
metageni
metagenomics-focus

FOCUS: An Agile Profiler for Metagenomic Data

234 10 8
smaegol
plasflow

PlasFlow - predicting plasmid sequences in metagenomic data

210 110 28
GenomicsStandardsConsortium
mixs-linkml

A LinkML model for the MIxS standard

147 63 24