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moshi4
pycirclize

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

22K 1K 60
labgem
ppanggolin

Build a partitioned pangenome graph from microbial genomes

8K 298 29
moshi4
pygenomeviz

A genome visualization python package for comparative genomics

6K 401 25
oschwengers
bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

3K 636 77
hallamlab
treesapp

TreeSAPP is a functional and taxonomic annotation tool for genomes and metagenomes.

2K 26 4
agmcfarland
genegrouper

CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.

588 18 4
moshi4
gbkviz

Easy-to-use web application for visualization and comparison of genomes in Genbank file

562 22 5
moshi4
aniclustermap

A tool for drawing ANI clustermap between all-vs-all microbial genomes

523 92 12
moshi4
cogclassifier

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

511 83 6
MDU-PHL
lissero

In silico serotyping of Listeria monocytogenes

387 9 10
moshi4
pybarrnap

Python implementation of barrnap (Bacterial ribosomal RNA predictor)

366 26 0
MDU-PHL
mdu-pytools

Small tools/scripts written in python

183 1 0
smdabdoub
qiime-tools

Tools for phylogenetic data analysis including visualization and cluster-computing support.

180 15 3
moshi4
mgcplotter

Microbial Genome Circular plotting tool for comparative genomics using Circos

170 38 8
quadram-institute-bioscience
albatradis

Comparative TraDIS analysis

163 9 4
cumbof
metasbt

A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees

125 14 3
jordiabante
biodive

A reference-free statistical approach to diversity-generating & mobile genetic element discovery

118 6 0
smdabdoub
phylotoast

Tools for phylogenetic data analysis including visualization and cluster-computing support.

64 15 3
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