Search Packages

pycirclize

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

ppanggolin

Build a partitioned pangenome graph from microbial genomes

pygenomeviz

A genome visualization python package for comparative genomics

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

treesapp

TreeSAPP is a functional and taxonomic annotation tool for genomes and metagenomes.

genegrouper

CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.

gbkviz

Easy-to-use web application for visualization and comparison of genomes in Genbank file

aniclustermap

A tool for drawing ANI clustermap between all-vs-all microbial genomes

cogclassifier

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

lissero

In silico serotyping of Listeria monocytogenes

pybarrnap

Python implementation of barrnap (Bacterial ribosomal RNA predictor)

mdu-pytools

Small tools/scripts written in python

qiime-tools

Tools for phylogenetic data analysis including visualization and cluster-computing support.

mgcplotter

Microbial Genome Circular plotting tool for comparative genomics using Circos

albatradis

Comparative TraDIS analysis

metasbt

A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees

biodive

A reference-free statistical approach to diversity-generating & mobile genetic element discovery

phylotoast

Tools for phylogenetic data analysis including visualization and cluster-computing support.