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seung-lab
cloud-volume

Read and write Neuroglancer datasets programmatically.

32K 171 53
rbnvrw
nd2reader

Pure Python library for reading NIS Elements ND2 images and metadata

8K 49 31
guiwitz
microfilm

Creating figures and animations for multi-channel images with a focus on microscopy.

2K 81 8
yfukai
laptrack

LapTrack

2K 64 4
rybakov-ks
particleanalyzer

A Computer Vision-Based Tool for Automatic Segmentation and Size Analysis of Nanoparticles in Scanning Electron Microscope (SEM) and Transmission Electron Microscope (TEM) Images

2K 18 4
isgilman
minicontourfinder

Lightweight image segmentation software for biological images.

1K 1 0
SandoghdarLab
piscat

PiSCAT is a python-based package with a graphical user interface for performing high-performance analysis on a variety of iSCAT measurements.

1K 21 14
lasisilab
fibermorph

Image analysis tool to measure hair cross-sectional micrographs and hair curvature images.

1K 2 3
sebi06
napari-czitools

napari plugin to open CZI image files and their metadata

866 13 1
MaxusTheOne
psf-analysis-cfim

A continuation of napari-psf-analysis for CFIM

563 2 0
wisstock
domb-napari

napari plugin for analyzing the redistribution of fluorescence-labeled proteins

558 1 0
sakoho81
miplib

A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.

240 89 26
lens-biophotonics
zetastitcher

ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

214 46 7
guyteichman
doubleblind

Blind and unblind file names automatically to maintain experimental integrity

193 0 1
Noble-Lab
cellcyclenet

Predicting cell cycle stage from 3D single-cell nuclear-stained images

166 10 0
yuanchenyang
multifocal-stitching

Algorithms and tools for stitching microscopy images taken at different focal lengths

161 12 0
arnaublanco
fluospotter

Fluospotter is an end-to-end pipeline designed for nuclei segmentation and puncta detection in fluorescence microscopy images.

109 3 0
sakoho81
quoll-compatible-miplib

A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.

80 89 26
marx-alex
napari-bleach-correct

Napari Photobleach Correction

58 4 0
cellimnet
scellseg

A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.

37 10 2
sakoho81
pyimq

pyimq is a small software utility that allows the ordering/sorting of image datasets, according to image-quality related statistical parameters

36 22 8
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