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gemmi

macromolecular crystallography library and utilities

pdbeccdutils

A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit

pdbecif

A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"

pdbe-arpeggio

Arpeggio calculates interatomic contacts based on the rules defined in CREDO.

nim-mmcif

mmCIF parser written in Nim with Python bindings

pdbe-mmcif-validator

Validate mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary

pdbrust

A Rust library for parsing PDB (Protein Data Bank) files

molecularnodes

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

moldf

Super lightweight and fast mmCIF/PDB/MOL2 file parser into Pandas DataFrames and backwards writer.

pdbx2df

Super lightweight and fast mmCIF/PDB/MOL2 file parser into Pandas DataFrames and backwards writer.

mmcif-gen

This application is designed to create mmcif files from facilities data.

contactextractor

Contact Extractor from PDB/mmCIF coordinate files

pdberellig

Identifies relevant ligands in the PDB

proteofav

PROtein Feature Aggregation and Variants.