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mikgroup
sigpy

Python package for signal processing, with emphasis on iterative methods

14K 337 104
rordenlab
dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

12K 1K 257
mmuckley
torchkbnufft

A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.

10K 250 48
nipreps
smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

10K 163 46
MRsources
mrzerocore

Python package and documentation for MR-zero

7K 70 24
deepinv
deepinv

DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning

7K 724 168
neuropoly
totalspineseg

Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

6K 95 8
imr-framework
pypulseq

Pulseq in Python

6K 198 88
nipreps
mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

6K 358 138
facebookresearch
fastmri

A large-scale dataset of both raw MRI measurements and clinical MRI images.

6K 2K 420
ywatanabe1989
scitex-dataset

Multi-domain scientific dataset fetcher — neuroscience, biology, pharmacology, medical. Part of SciTeX.

4K 0 0
mckib2
phantominator

Generate numerical phantoms.

3K 44 2
BrainLesion
auxiliary

helpful functions for handling biomedical-imaging data in DICOM or NIfTI format

3K 2 3
mckib2
ssfp

SSFP simulation and algorithms.

3K 12 1
khanlab
zarrnii

Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

2K 10 4
ProjectNeura
mipcandy

Build a complete experiment pipeline for your PyTorch MIP model in 10 seconds.

2K 291 44
moneyfeel-io
moneyfeel-mri

Free REST API for the moneyfeel Macro & Geopolitical Risk Index (MRI) — market regime classifier covering 5 regions across Daily/Weekly/Monthly timeframes. Free for researchers, quants and portfolio managers.

2K 1 0
Plasma-Blue
mikan-rs

A medical image kit for segmentation metrics evaluation, native Rust support, and Python bindings for cross-language performance.

2K 1 0
BrainLesion
brainles-preprocessing

preprocessing tools for multi-modal 3D brain imaging

2K 31 8
jcreinhold
intensity-normalization

Normalize MR image intensities in Python

2K 342 58
DelinteNicolas
time-python

This repository contains the code of UtiliziNg tRActography to uncoVEr muLti-fixel microstructure (UNRAVEL).

2K 28 1
paquiteau
brainweb-dl

Brainweb Dataset downloader

2K 11 3
mrphys
tensorflow-mri

A Library of TensorFlow Operators for Computational MRI

2K 49 6
Donders-Institute
bidscoin

BIDScoin converts your source-level neuroimaging data to BIDS

2K 156 37
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