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scverse
mudata

Multimodal Data (.h5mu) implementation for Python

147K 120 22
scverse
muon

muon is a multimodal omics Python framework

28K 266 36
khoatran1995
platygeno

Unsupervised Gene Discovery via Evo 2 & SAE Interpretability

2K 0 0
pievos101
gnnsubnet

Disease subnetwork detection with explainable Graph Neural Networks

1K 27 5
glasgowcompbio
pymultiomics

Python toolbox for multi-omics data mapping and analysis

1K 27 6
xing-lab-pitt
graphvelo

Inferring multi-modality dynamics for single cell genomics data

946 13 2
bioFAM
mofaflex

factor models for omics data

927 38 3
RasmussenLab
move-dl

Multi-omics variational autoencoder

655 94 33
xu62u4u6
pymaftools

A Python toolkit for MAF files and multi-omics cancer genomics — parsing, analysis, ML, and publication-ready visualization.

624 7 2
BIMSBbioinfo
maui-tools

Multi-omics Autoencoder Integration

467 51 21
sdsc-ordes
modos

Python API to manage multi-omics digital objects

467 2 1
JonnyTran
openomics

OpenOmics provides a bioinformatics API and web-app platform integrate and visualize the multiomics and clinical data.

393 36 11
epruesse
ymp

Flexible multi-omic pipeline system

365 17 4
PMBio
mudatasets

Multimodal datasets, in MuData format

288 4 1
bhi-kimlab
neticspy

Python implementation of NetICS. (Network-based Integration of Multi-omics data).

198 1 1
inukj
monti

A multi-omics integrative analysis tool

116 5 8
ZJUFanLab
scotch-sc

SCOTCH is a Single-Cell multi-modal integration method leveraging the Optimal Transport algorithm and a cell matCHing strategy

28 6 0
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