Search Packages

oxbow

Oxbow makes genomic data ready for high-performance analytics.

sdrf-pipelines

SDRF official validator and converts SDRF to pipeline configuration files

scarches

Reference mapping for single-cell genomics

iptkl

IPTK is a library specialized in the analysis of HLA-peptidomes identified through an immunopeptidomics pipeline.

scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

garfield

Graph-based Contrastive Learning enable Fast Single-Cell Embedding

recon

Exploring multicellular coordination from single-cell gene expression / multi-omics using mutlilayer network representations

mercat2

versatile k-mer counter and diversity estimator for database independent property analysis (DIPA) for multi-omic analysis

scmkl

Python package for single-cell analysis with multiple kernel learning.

ddipy

OmicsDI Rest API client in Python

cell-tools

Single-Cell Data Analysis Tools

pyddi-xupan

OmicsDI Rest API client in Python

sc-tools

Single-Cell Data Analysis Tools

scarf-toolkit

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.