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althonos
pyfamsa

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

18K 41 4
althonos
pytrimal

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!

10K 27 2
moshi4
pymsaviz

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

8K 191 23
sokrypton
colabfold

Making Protein folding accessible to all!

8K 3K 715
nanoporetech
pyspoa

Python bindings to spoa

6K 22 4
yangao07
pyabpoa

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

3K 137 22
clabe-wekesa
sato

A python pipeline that brings together tools for generation of consensus sequence, multiple sequence alignment, and phylogenetic analysis.

615 0 0
microsoft
evodiff

Python package for generation of protein sequences and evolutionary alignments via discrete diffusion models

495 668 110
samberry19
bioviper

Enhancements to Biopython for working with biological data

300 7 1
ramonamerong
hladownload

Python command line program and module for retrieving HLA alleles, frequencies and eplets.

273 4 1
Maryam-Haghani
neffy

A Python interface of NEFFy C++ tool: NEFF Calculator and MSA File Converter

183 13 1
psipred
dmpfold

Fast and accurate protein structure prediction

128 58 15
jasperlinthorst
reveal

Graph based multi genome aligner

113 49 3
benhid
sequoya

Solving Multiple Sequence Alignments with Python

55 18 3
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