Search Packages

sopa

Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

ark-analysis

Integrated pipeline for multiplexed image analysis

spatialprofilingtoolbox

Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)

astir

astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨

spatial-lda

Probabilistic topic model for identifying cellular micro-environments.

spatiomic

A Python package for unsupervised analysis of spatial (prote)omics data.

pyimc

Rust library for reading imaging mass cytometry (IMC) data stored in .mcd files.

smprofiler

Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)

hdi-utils

High-dimensional image data utilities

miaaim-python

MIAAIM: Multi-omics Image Alignment and Analysis by Information Manifolds