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prism-oncology
sopa

Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

6K 275 49
angelolab
ark-analysis

Integrated pipeline for multiplexed image analysis

4K 105 30
nadeemlab
spatialprofilingtoolbox

Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)

1K 23 2
camlab-bioml
astir

astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨

1K 57 13
calico
spatial-lda

Probabilistic topic model for identifying cellular micro-environments.

772 28 12
complextissue
spatiomic

A Python package for unsupervised analysis of spatial (prote)omics data.

619 17 0
AlanRace
pyimc

Rust library for reading imaging mass cytometry (IMC) data stored in .mcd files.

431 2 0
nadeemlab
smprofiler

Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)

307 23 2
JoshuaHess12
hdi-utils

High-dimensional image data utilities

201 0 0
JoshuaHess12
miaaim-python

MIAAIM: Multi-omics Image Alignment and Analysis by Information Manifolds

51 5 1
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