Napari Python Packages

npe2

napari plugin engine v2

142K 19 36

napari

napari: a fast, interactive, multi-dimensional image viewer for python

137K 3K 489

napari-plugin-manager

napari plugin manager to provide a graphical user interface for installing napari plugins.

56K 9 11

partseg

Tool for segmentation in bioimaging

17K 37 10

napari-spatialdata

Interactive visualization of spatial omics data

15K 85 23

napari-matplotlib

Linking napari layers with Matplotlib plots

9K 43 23

napatrackmater

Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.

9K 18 3

napari-omero

Browse your OMERO database from within napari.

6K 40 16

napari-skimage-regionprops

Feature extraction for labeled objects in images using regionprops from scikit-image

5K 55 13

impy-array

Speed up coding/extending image analysis in Python.

3K 37 1

napari-animation

A napari plugin for making animations

3K 96 33

brainreg-segment

Segmentation of anatomical structures in a common coordinate space

2K 36 12

napari-pyclesperanto-assistant

GPU-accelerated image processing in napari using OpenCL

2K 36 9

brainglobe-segmentation

Segmentation of anatomical structures in a common coordinate space

2K 36 12

napari-aicsimageio

Multiple file format reading directly into napari using pure Python

2K 38 12

mikro-napari

napari within the mikro environment

1K 0 0

blik

Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

1K 30 10

bellavista

Python package for interactive visualization of imaging-based spatial transcriptomics

1K 7 2

lls-core

Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

1K 14 6

cellfinder-napari

Efficient cell detection in large images using cellfinder in napari

1K 22 4

napari-allencell-segmenter

A plugin that enables 3D image segmentation provided by Allen Institute for Cell Science

1K 19 8

stardist-napari

Object Detection with Star-convex Shapes

890 39 10

cellpose-napari

napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

727 63 26

itk-napari-conversion

Convert between itk and napari data structures.

678 4 1

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