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scverse
napari-spatialdata

Interactive visualization of spatial omics data

15K 85 23
PolusAI
bfio

Interface to the Bioformats Java library

10K 13 9
matplotlib
napari-matplotlib

Linking napari layers with Matplotlib plots

9K 43 23
wulinteousa2-hash
napari-chat-assistant

Local AI and deterministic workbench for napari image-analysis workflows

6K 5 1
tlambert03
napari-omero

Browse your OMERO database from within napari.

6K 40 16
janclemenslab
napari-video

Napari plugin for working with video files.

6K 13 3
haesleinhuepf
napari-skimage-regionprops

Feature extraction for labeled objects in images using regionprops from scikit-image

5K 55 13
brainglobe
brainglobe-napari-io

Read and write files from the BrainGlobe neuroanatomy suite

5K 15 5
ome
napari-ome-zarr

A napari plugin for zarr backed OME-NGFF images

4K 50 26
haesleinhuepf
napari-segment-blobs-and-things-with-membranes

A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.

3K 31 8
haesleinhuepf
napari-time-slicer

A meta plugin for processing timelapse data timepoint by timepoint in napari

3K 5 3
gletort
fishfeats

Napari plugin for spatial RNA quantification

2K 5 2
clEsperanto
napari-pyclesperanto-assistant

GPU-accelerated image processing in napari using OpenCL

2K 36 9
haesleinhuepf
napari-accelerated-pixel-and-object-classification

GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.

2K 46 9
BiAPoL
napari-clusters-plotter

A napari plugin for clustering objects according to their properties.

2K 90 10
macromeer
napari-tmidas

A plugin for batch processing of confocal and whole-slide microscopy images of biological tissues

1K 13 0
jhnnsrs
mikro-napari

napari within the mikro environment

1K 0 0
haesleinhuepf
napari-simpleitk-image-processing

Process images using SimpleITK in napari

1K 23 4
brainglobe
cellfinder-napari

Efficient cell detection in large images using cellfinder in napari

1K 22 4
CAREamics
careamics-napari

napari plugin for CAREamics

1K 7 3
AllenCell
napari-allencell-segmenter

A plugin that enables 3D image segmentation provided by Allen Institute for Cell Science

1K 19 8
rdemets
napari-yolov5

Plugin adapted from Ultralytics to bring YOLOv5 into Napari

1K 7 1
haesleinhuepf
napari-process-points-and-surfaces

Process and analyze surfaces using open3d and vedo in napari

1K 25 4
haesleinhuepf
devbio-napari

A bundle of napari plugins useful for 3D+t image processing and analysis for studying developmental biology.

981 52 13
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