Search Packages

bmt

A collection of useful python functions for looking up information and working with the Biolink Model

reasoner-pydantic

Pydantic models for the Reasoner API data formats

biothings

BioThings API framework - Making high-performance API for biological annotation data

tablassert

Extract knowledge assertions from tabular data into NCATS Translator-compliant KGX NDJSON — declaratively, with entity resolution and quality control built in.

reasoner-transpiler

A library for converting TRAPI queries into cypher queries, taking into account the biolink predicate hierarchy

biothings-explorer

TRAPI service for BioThings Explorer

biolinkmg

Schema and generated objects for biolink data model and upper ontology

kp-registry

Translator KP Registry

mvp-module-library

A collection of modules for executing MVP Workflows

gamma-viewer

Interactive Translator UI for the Jupyter notebook, using React.

kg2-util

Some tools for interacting with large KG babel information. This software project is experimental and unfinished.

biothings-explorer-test

TRAPI service for BioThings Explorer