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HadrienG
taxadb

:hatching_chick: locally query the ncbi taxonomy

953 39 15
CVUA-RRW
taxidtools

A Python Toolkit for Taxonomy

635 3 2
ggonnella
fastsubtrees

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

447 4 0
zyxue
ncbitax2lin

A tool that converts NCBI taxonomy dump into lineages

404 153 31
ggonnella
ntmirror

Easily updatable local NCBI taxonomy database copy

231 4 0
ggonnella
genomes-attributes-viewer

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

203 4 0
ggonnella
ntdownload

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

183 4 0
crosenth
rrat

Ribosomal RNA Allele Tree

128 0 0
ggonnella
ntsubtree

Tree representation for fast queries of the subtree of a taxon in the NCBI taxonomy tree

121 4 0
FOI-Bioinformatics
flextaxd

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

75 67 8
kullrich
taxadb2

local query the ncbi taxonomy

61 0 0
crosenth
taxmagick

Tools for managing ncbi taxonomic data

59 1 0
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