Search Packages

taxadb

:hatching_chick: locally query the ncbi taxonomy

taxidtools

A Python Toolkit for Taxonomy

fastsubtrees

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

ncbitax2lin

A tool that converts NCBI taxonomy dump into lineages

ntmirror

Easily updatable local NCBI taxonomy database copy

genomes-attributes-viewer

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

ntdownload

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

rrat

Ribosomal RNA Allele Tree

ntsubtree

Tree representation for fast queries of the subtree of a taxon in the NCBI taxonomy tree

flextaxd

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

taxadb2

local query the ncbi taxonomy

taxmagick

Tools for managing ncbi taxonomic data