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pybel
pybel

🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)

16K 138 32
mikelkou
favapy

Functional Associations using Variational Autoencoders

769 42 4
bio2bel
bio2bel-kegg

A Bio2BEL package for integrating pathway-related information from KEGG in BEL

742 13 3
bio2bel
bio2bel-reactome

Integration of pathway-related information from Reactome in BEL

738 5 1
saezlab
annnet

A Python tool to build, manipulate, and interoperate with flexible graph structures

710 9 0
yollct
spycone

Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data

666 12 1
cthoyt
bio2bel-entrez

A Bio2BEL package for converting Entrez and HomoloGene to BEL

533 0 0
elife-asu
neet

Simulating and analyzing network models

446 6 10
drug2ways
drug2ways

A Python package for drug discovery by analyzing causal paths on multiscale networks

375 28 7
pharmacome
hbp-knowledge

Knowledge curated in BEL from full text during the Human Brain Pharmacome project

324 4 7
pybel
pybel-cx

A PyBEL extension for interconversion with CX

284 0 0
COVID-19-Causal-Reasoning
bel2scm

Generate dynamic structural causal models from biological knowledge graphs encoded in the Biological Expression Language (BEL)

257 10 4
bio2bel
bio2bel-drugbank

A Bio2BEL package for DrugBank (https://www.drugbank.ca)

223 10 5
bio2bel
bio2bel-interpro

A Bio2BEL package for converting InterPro to BEL

194 0 0
PathwayMerger
pathme-viewer

A web application for visualizing and exploring pathway knowledge in Biological Expression Language (BEL)

165 6 2
neurodata
neuropull

A (soon to be) lightweight Python package for accessing single-cell connectome networks with metadata.

137 2 0
bio2bel
bio2bel-expasy

A Bio2BEL package for converting ExPASy to BEL

137 0 0
bel-commons
bel-commons

An environment for curating, validating, and exploring knowledge assemblies encoded in BEL

133 4 0
bio2bel
bio2bel-go

A Bio2BEL package for converting the Gene Ontology (GO) to BEL

96 1 0
pharmacome
conib

Curation of Neurodegeneration in Biological Expression Language (CONIB)

83 4 7
hemekg
hemekg

Mechanistic knowledge about heme and hemolytic disorders in Biological Expression Language with PyBEL

74 3 3
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