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LUMC
pytest-workflow

Configure workflow/pipeline tests using yaml files.

57K 69 10
nf-core
nf-core

Python package with helper tools for the nf-core community.

47K 304 239
goodwright
nextflowpy

Python wrapper around Nextflow.

5K 62 7
segrelab
micone

The Microbial Co-occurrence Network Explorer

2K 21 4
bigbio
quantms-utils

A python library with scripts and helpers classes for quantms workflow

2K 6 5
jfallmann
monsda

MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis

1K 12 3
rodjc
nflaunch

nflaunch is a command-line tool to simplify launching Nextflow pipelines on cloud batch services (GCP Batch)

765 5 0
assemblerflow
flowcraft

A Nextflow pipeline assembler for genomics. Pick your modules. Assemble them. Run the pipeline.

639 248 45
pybrave
pybrave

Bioinformatics Reactive Analysis and Visualization Engine

497 4 0
brwnj
covviz

Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata

440 58 7
jsmccabe1
sceptr-profiling

Statistical Characterisation of Expression Profiles in Transcriptomes

347 4 0
ODiogoSilva
assemblerflow

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:

307 248 45
kirilenkobm
py-nf

Python library to execute batches of jobs using nextflow.

227 5 1
royjacobson
nf-python-plugin

Nextflow plugin enabling seamless integration between Nextflow and Python 🧪

79 9 0
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