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pysam-developers
pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

1.7M 889 297
pepkit
peppy

Project metadata manager for PEPs in Python

170K 40 13
galaxyproject
galaxy-tool-util

Data intensive science for everyone.

93K 2K 1K
galaxyproject
galaxy-util

Data intensive science for everyone.

90K 2K 1K
galaxyproject
galaxy-tool-util-models

Data intensive science for everyone.

79K 2K 1K
deeptools
deeptools

Tools to process and analyze deep sequencing data.

21K 759 221
open2c
cooler

A cool place to store your Hi-C

17K 237 60
open2c
pairtools

Extract 3D contacts (.pairs) from sequencing alignments

14K 131 37
jfjlaros
barcode

NGS barcode design and validation.

10K 7 2
abdenlab
oxbow

Oxbow makes genomic data ready for high-performance analytics.

9K 153 15
galaxyproject
galaxy-objectstore

Data intensive science for everyone.

7K 2K 1K
davidlougheed
strkit

A short tandem repeat (STR) genotyping and analysis toolkit for long reads

6K 18 1
sequana
sequana

Sequana: a set of Snakemake NGS pipelines

6K 151 27
galaxyproject
galaxy-job-metrics

Data intensive science for everyone.

5K 2K 1K
galaxyproject
galaxy-files

Data intensive science for everyone.

5K 2K 1K
galaxyproject
galaxy-data

Data intensive science for everyone.

5K 2K 1K
galaxyproject
galaxy-job-execution

Data intensive science for everyone.

4K 2K 1K
galaxyproject
galaxy-web-framework

Data intensive science for everyone.

4K 2K 1K
galaxyproject
galaxy-web-stack

Data intensive science for everyone.

4K 2K 1K
galaxyproject
galaxy-app

Galaxy application (backend)

4K 2K 1K
galaxyproject
galaxy-containers

Data intensive science for everyone.

4K 2K 1K
galaxyproject
galaxy-tours

Galaxy tours backend framework

4K 2K 1K
galaxyproject
galaxy-auth

Galaxy auth framework and implementations

4K 2K 1K
mcvickerlab
wasp2

WASP2: High-performance allele-specific analysis pipeline for next-generation sequencing data

4K 9 0
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