Search Packages

nibabel

Python package to access a cacophony of neuro-imaging file formats

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

med-imagetools

Transparent and reproducible medical image processing pipelines in Python.

auxiliary

helpful functions for handling biomedical-imaging data in DICOM or NIfTI format

zarrnii

Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

imio

Loading and saving of image data.

niivue-streamlit

A Streamlit component for NiiVue neuroimaging viewer

nii2dcm

nii2dcm: NIfTI to DICOM creation with Python

data-tracking

This project contains scripts to extract metadata from DICOM files, NIFTI files and spreadsheets, and import them into a database.

convert-source

Convert source DICOM, PAR REC or NIFTI image data to BIDS directory layout

vids-validator

Open standard for structuring, validating, and delivering annotated medical imaging datasets for AI/ML

som

Stanford open modules for python

nekton

A python package for DICOM to NifTi and NifTi to DICOM-SEG and GSPS conversion

nii2png

🖼 A lightweight neuroimaging .nii to .png converter for Matlab and Python users

pyvoxel

Fast Pythonic data structures and tools for wrangling medical images.

erwin

Toolbox to generate quantitative maps from MRI images

niftiai

Train neural nets on 3D images (e.g. MRIs) 🧠

nii-info

Display NIfTI image information in a tabular format

batch-niistats

Calculate descriptive statistics for large numbers of 3D .nii files and return the output as a .csv file. Pure python code that works very quickly on all operating systems.

retinex-for-mri

Retinex algorithm for MRI data.

biswebpython

This is the repository for the BioImage Suite Web Project

pydcm2niix

DCM2NIIX Python package

zarrnii-plugin-api

Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

iphigen

A command-line program for n-dimensional image enhancement and color balancing.