Search Packages

curies

🐸 Idiomatic conversion between URIs and compact URIs (CURIEs) in Python

prefixmaps

Semantic prefix map registry

fastobo

Faultless AST for Open Biomedical Ontologies in Python.

pronto

A Python frontend to (Open Biomedical) Ontologies.

ontoportal-client

🎡 Unified access to OntoPortal instances like BioPortal, AgroPortal, and EcoPortal

ontobio

python library for working with ontologies and ontology associations

pyobo

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

obographs

A Pydantic model for OBO Graph JSON

pkt-kg

A Python library for scalable knowledge semantic graph construction

kgcl

Knowledge Graph Change Language

dosdp

A simple system for specifying OWL class design patterns for OBO-ish ontologies.

biolinkmg

Schema and generated objects for biolink data model and upper ontology

biolookup

🔍 The Biolookup Service retrieves metadata and ontological information about biomedical entities.

debio

A community-curated, decentralized biomedical ontology.

odk-core

Docker-less, core package for the Ontology Development Kit

sparqlfun

sparql templates for linkml (alpha)

oquat

Assess the quality of biomedical ontologies

omop2obo

OMOP2OBO is the first health system-wide, disease-agnostic mappings between standardized clinical terminologies in the Observational Medical Outcomes Partnership (OMOP) common data model and several Open Biomedical Ontologies (OBO).