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aignostics

🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.

bipl

Big Image Python Library

digipathai

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

py-wsi

Python package for dealing with whole slide images (.svs) for machine learning, including intuitive, painless patch sampling using OpenSlide, automatic labeling from ImageScope XML annotation files, and functions for saving these patches and their meta data into lightning memory-mapped databases (LMDB) for quick reads.

compay-syntax

:microscope: Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

vsi2tif

A package for converting images from cellSens VSI format to tiled, pyramidal TIFF