Search Packages

tableschema-to-template

Given a Frictionless Table Schema, generate an Excel template with input validation

hubmap-commons

The common code supporting the HuBMAP web services

hubmap-entity-sdk

Python SDK to access HuBMAP Entity API

hubmap-search-sdk

Python SDK to access HuBMAP Search API

portal-visualization

Given HuBMAP Dataset JSON, creates a Vitessce configuration

hubmap-pipeline-release-mgmt

Management scripts for releasing HuBMAP computational pipelines

hubmap-api-py-client

Python client for the Cells API

hubmap-mudata-validator

Python package to validate mudata objects.

sprmpkg

Spatial Process & Relationship Modeling

hubmap-ome-utils

OME-XML utility functions for HuBMAP computational pipelines

hra-glb-mesh-collisions

A command-line interface to extract mesh-mesh collision information from GLB files

hubmap-fastq-utils

FASTQ utility functions for HuBMAP computational pipelines

ubergraph2asct

Generates ASCT table from Ubergraph

hubmap-anndata-validator

Python package to validate mudata objects.