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sanger-pathogens
pyfastaq

Python3 scripts to manipulate FASTA and FASTQ files

3K 73 21
sanger-pathogens
ariba

ARIBA: Antibiotic Resistance Identification By Assembly

1K 187 60
sanger-pathogens
circlator

A tool to circularize genome assemblies

406 255 57
sanger-pathogens
iva

Iterative Virus Assembler

316 58 19
ChongLC
uniqmin

An alignment-independent tool for the study of pathogen sequence diversity

277 7 2
Shylock-Hg
viman

Plugin manager of vim.

241 3 0
andrewjpage
tiptoft

Predict plasmids from uncorrected long read data

218 41 10
ccdmb
catastrophy

CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.

190 6 0
quadram-institute-bioscience
albatradis

Comparative TraDIS analysis

177 9 4
sanger-pathogens
seroba

SEROBA: Serotyping for illumina reads

88 25 20
andrewjpage
plasmidpredictor

plasmidpredictor: predict which plasmid should be present from uncorrected long read data

86 41 10