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histolab
histolab

Library for Digital Pathology Image Processing

8K 456 66
slideflow
slideflow

Powerful, open-source AI tools for digital pathology.

2K 360 64
kaiko-ai
kaiko-eva

Evaluation framework for oncology foundation models (FMs)

2K 156 38
TIO-IKIM
pathopatch

PathoPatcher is a Python project designed for accelerating Whole Slide Image Preprocessing, employing AI-based preprocessing techniques with features like annotation handling, color normalization, and configurable parameters

2K 11 8
nadeemlab
deepliif

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

2K 249 90
Dana-Farber-AIOS
pathml

Tools for computational pathology

1K 451 89
DIAGNijmegen
wholeslidedata

No description available

945 113 31
complextissue
spatiomic

A Python package for unsupervised analysis of spatial (prote)omics data.

613 17 0
SBU-BMI
wsinfer

Run patch-based classification on pathology whole slide images.

582 86 14
rhong3
panoptes-he

A multi-resolution CNN package to predict endometrial cancer features

574 2 0
histocartography
histocartography

Installable histocartography package.

455 268 64
PingjunChen
pyslide

Digital Pathology Whole Slide Image Analysis Toolbox

424 53 8
idso-fa1-pathology
vitaminp

VitaminP: a vision transformer-assisted multimodal integration network for pathology cell segmentation

412 8 1
bresan
digipathos

Brazilian Agricultural Research Corporation (EMBRAPA) fully annotated dataset for plant diseases. Plug and play installation over PiP.

259 44 9
bresan
answer

No description available

172 44 9
PingjunChen
tissueloc

Localize the tissue regions in whole slide pathology images.

128 45 12
bio2bel
bio2bel-adeptus

Convert differential gene expression signatures for diseases from ADEPTUS to BEL

102 1 0
mahmoodlab
trident-test

A package for preprocessing whole-slide images.

50 531 114
vlopezferrando
pymut

Machine learning methods for the prediction of pathology in protein mutations, as in the PMut predictor.

47 6 4
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