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reactome
reactome2py

python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.

5K 35 11
cwieder
sspa

Single sample pathway analysis tools for omics data

942 14 5
compath
compath-utils

A utilities package for ComPath

520 0 0
compath
compath-resources

ComPath Resource Utilities

402 9 1
PathwayMerger
pathme

Harmonizing pathway databases using Biological Expression Language (BEL)

398 20 2
cwieder
pathintegrate

PathIntegrate Python package for pathway-based multi-omics data integration

395 18 1
jsmccabe1
sceptr-profiling

Statistical Characterisation of Expression Profiles in Transcriptomes

347 4 0
bio2bel
bio2bel-msig

Integration of pathway-related information from MSigDB in BEL

307 2 0
krassowski
gsea-api

Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)

300 16 2
Micromeda
pygenprop

A python library for programmatic usage of EBI InterPro Genome Properties.

238 9 5
ComPath
compath

A web application for exploring, analyzing, and curating pathway databases

232 13 0
PathwayMerger
pathme-viewer

A web application for visualizing and exploring pathway knowledge in Biological Expression Language (BEL)

165 6 2
LucasESBS
scvega

VEGA: a VAE Enhanced by Gene Annotations for interpretable scRNA-seq deep learning

101 18 2
ComPath
compath-hgnc

A wrapper around Bio2BEL HGNC for ComPath

89 0 0