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compomics
ms2pip

MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.

11K 49 19
compomics
psm-utils

Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

6K 31 10
MannLabs
alphadia

modular & open DIA search

2K 108 11
compomics
ms2rescore

Modular and user-friendly platform for AI-assisted rescoring of peptide identifications.

2K 64 21
pgarrett-scripps
peptacular

A Python package for peptide sequence analysis built around ProForma 2.1 notation. Calculate masses, generate fragments, predict isotopic patterns, and more.

1K 17 2
lemieux-lab
pepid

Pepid: a Highly Modifiable, Bioinformatics-Oriented Peptide Search Engine

144 2 1
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