Plasmids Python Packages

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

3K 636 77

synbio

a DNA assembly library

2K 23 2

mob-suite

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

946 174 33

dnadesign

A lua package for designing DNA.

572 38 1

moclo

A Python implementation of the MoClo system logic.

541 12 2

cb-platon

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

297 121 15

moclo-ytk

Yeast ToolKit implementation for the base moclo library.

224 12 2

plasflow

PlasFlow - predicting plasmid sequences in metagenomic data

210 110 28

moclo-cidar

CIDAR implementation for the base moclo library.

185 12 2

moclo-ecoflex

Modular cloning simulation with the MoClo framework in Python

183 12 2

tadrep

Targeted Detection and Reconstruction of Plasmids

178 22 1

python-queen

QUEEN (a Python module to universally program, QUinE, and Edit Nucleotide sequences)

167 46 9

plasmidcanvas

A simple python plasmid map creator

102 4 1

minkemap

A Python-based Circular Genome Visualization Tool

68 2 0

plasmiduncover

Script to obtain plasmid id from WGS data using bowtie2 to map

67 1 1

refseq-plasmid-dl

Downloads plasmids from refseq ftp

66 2 0

plascad

Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.

56 52 13

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