Search Packages

fwdpy11

Forward-time simulation in Python using fwdpp

adamixture

Fast population clustering with Adam-EM Optimization.

natal-core

Numba-Accelerated Toolkit for Analysis of Lifecycles

oppoppopinit

PyPI package containing opposition learning operators and population initializers for evolutionary algorithms

palos

A repo that contains miscellaneous Python/C++ modules/programs, a standalone Python module 'palos' by the yfish group (can be installed by pip).

neural-admixture

Rapid population clustering with autoencoders

diploshic

A deep learning tool for identifying hard and soft selective sweeps in population genomic data

gnomad-db

Scalable SQLite database for fast querying of gnomAD variant annotations (allele frequency, depth, population metrics). Supports gnomAD v2-v4, WGS and WES.

graphpop-cli

GraphPop is a population genomics platform that replaces the flat-file, matrix-based paradigm with a graph-native architecture.

graphmana

Graph-native data management platform for variant genomics

mycorrhiza

Mycorrhiza population assignment tools.

poppunk

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

haplodynamics

A python library to develop genomic data simulators

tajimas-d

Compute the Tajima's-D, Pi-Estimator or Watterson-Estimator for multiple sequences.

timesweeper

A tool for detecting positive selective sweeps using time-series genomcis data.

moranpycess

Python framework for Moran Processes driven by game theory

laax

Repository for population genetics and quantitative genetics metrics implementarion and visualization