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molpopgen
fwdpy11

Forward-time simulation in Python using fwdpp

8K 32 6
AI-sandbox
adamixture

Fast population clustering with Adam-EM Optimization.

4K 23 1
jyzhu-pointless
natal-core

Numba-Accelerated Toolkit for Analysis of Lifecycles

3K 3 1
PasaOpasen
oppoppopinit

PyPI package containing opposition learning operators and population initializers for evolutionary algorithms

2K 6 2
polyactis
palos

A repo that contains miscellaneous Python/C++ modules/programs, a standalone Python module 'palos' by the yfish group (can be installed by pip).

2K 0 0
AI-sandbox
neural-admixture

Rapid population clustering with autoencoders

2K 86 11
kr-colab
diploshic

A deep learning tool for identifying hard and soft selective sweeps in population genomic data

1K 59 17
KalinNonchev
gnomad-db

Scalable SQLite database for fast querying of gnomAD variant annotations (allele frequency, depth, population metrics). Supports gnomAD v2-v4, WGS and WES.

804 52 12
jfmao
graphpop-cli

GraphPop is a population genomics platform that replaces the flat-file, matrix-based paradigm with a graph-native architecture.

757 2 0
jfmao
graphmana

Graph-native data management platform for variant genomics

735 2 0
jgeofil
mycorrhiza

Mycorrhiza population assignment tools.

727 7 2
johnlees
poppunk

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

545 108 22
remytuyeras
haplodynamics

A python library to develop genomic data simulators

526 4 0
not-a-feature
tajimas-d

Compute the Tajima's-D, Pi-Estimator or Watterson-Estimator for multiple sequences.

406 7 0
SchriderLab
timesweeper

A tool for detecting positive selective sweeps using time-series genomcis data.

306 19 2
AngryMaciek
moranpycess

Python framework for Moran Processes driven by game theory

72 6 6
kkokay07
laax

Repository for population genetics and quantitative genetics metrics implementarion and visualization

68 2 0
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