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Croydon-Brixton
pymol-remote

Send data to and from pymol from a remote server (e.g. a cluster running deep learning workflows)

15K 37 3
a-r-j
graphein

Protein Graph Library

5K 1K 140
y1zhou
arpeggia

Calculation of interatomic interactions in molecular structures

3K 4 1
tshauck
gcgc

An ML-feature processing library for biological sequences.

2K 9 1
lucidrains
tr-rosetta-pytorch

Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design

831 83 8
drewschaub
protein-design-tools

A library of tools for protein design

619 2 0
OATML-Markslab
proteinnpt

Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"

408 130 18
samsinai
flexs

FLEXS: an open simulation environment for developing and comparing model-guided biological sequence design algorithms.

358 171 22
OATML-Markslab
proteingym

Official repository for the ProteinGym benchmarks

300 422 55
dohlee
protstruc

Protein structure handling in Python made easy.

287 3 1
jaumebonet
rstoolbox

Python Toolbox For Rosetta Silent Files Processing

221 10 9
kyegomez
progen-torch

Paper - Pytorch

202 11 0
psalveso
pyrif

Using Rotamer Interaction Fields from RIFGen/Dock in python

181 18 4
RomeroLab
ggrecomb

Design recombinant protein libraries for Golden Gate Assembly.

149 7 5
LLNL
protlib-designer

Integer Linear Programming for Protein Library Design

112 9 2
poseidonchan
protein-watermark

Injecting watermarks to protein sequences for privacy protection in biosecurity

66 10 1
RomeroLab
schemarecomb

Design chimeric protein libraries with Golden Gate Assembly.

51 7 5
willsheffler
rif

Rotamer Interaction Field Python Libraries for Computational Protein Design

37 14 10
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