Search Packages

pymol-remote

Send data to and from pymol from a remote server (e.g. a cluster running deep learning workflows)

graphein

Protein Graph Library

arpeggia

Calculation of interatomic interactions in molecular structures

gcgc

An ML-feature processing library for biological sequences.

tr-rosetta-pytorch

Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design

protein-design-tools

A library of tools for protein design

proteinnpt

Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"

flexs

FLEXS: an open simulation environment for developing and comparing model-guided biological sequence design algorithms.

proteingym

Official repository for the ProteinGym benchmarks

protstruc

Protein structure handling in Python made easy.

rstoolbox

Python Toolbox For Rosetta Silent Files Processing

progen-torch

Paper - Pytorch

pyrif

Using Rotamer Interaction Fields from RIFGen/Dock in python

ggrecomb

Design recombinant protein libraries for Golden Gate Assembly.

protlib-designer

Integer Linear Programming for Protein Library Design

protein-watermark

Injecting watermarks to protein sequences for privacy protection in biosecurity

schemarecomb

Design chimeric protein libraries with Golden Gate Assembly.

rif

Rotamer Interaction Field Python Libraries for Computational Protein Design