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y1zhou
arpeggia

Calculation of interatomic interactions in molecular structures

3K 4 1
kexinhuang12345
deeppurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

3K 1K 301
mlund
duello

Osmotic second virial coefficient (𝐵₂) and dissociation constant (𝐾𝑑) for two rigid macromolecules

1K 1 1
hclimente
spada

⚔️ Find splicing-led, functional changes of the proteome.

953 10 1
louadi
nease

A network-based approach for exon set enrichment

538 15 2
dwhswenson
contact-map

Contact map analysis for biomolecules; based on MDTraj

478 48 21
Synthyra
protify

Low code molecular property prediction

408 11 7
sbl-sdsc
mmtfpyspark

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

384 68 27
leonweber
pedl

Search the biomedical literature for protein interactions and protein associations

298 11 2
DeepRank
deeprank

Rank Protein-Protein Interactions using Deep Learning

239 147 24
Emad-COMBINE-lab
ppi-origami

Tools for processing and analysing PPI datasets

237 0 0
CSB-KUL
ymap

An automated method to map yeast variants to protein modifications and functional regions

209 5 6
afowdar
mdinteractions

A python package for the distance-based analysis of intra- and inter-protein interactions

198 0 0
qwerty239qwe
ppi-net-builder

Protein-Protein Interaction (PPI) network construction and analysis using STRING-db (https://string-db.org/) in Python.

197 0 1
ylaboratory
splitpea

Splitpea: method for calculating network rewiring changes due to splicing

183 1 0
snehaiasri
acrcasppi-ml

Prediction of protein-protein interaction between anti-crispr protein (acr) and CRISPR-associated (cas) protein using machine learning algorithm

153 0 0
scastlara
ppaxe

Text mining tool to retrieve protein-protein interactions from the scientific literature.

117 13 5
Emad-COMBINE-lab
intrepppid

Incorporating Triplet Error for Predicting PPIs using Deep Learning

81 0 0
kuijjerlab
pyscorpion

Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks

67 0 0
FarSeer-NMR
farseernmr

A software suite for automatic treatment, analysis and plotting of large and multivariable datasets of bioNMR peaklists.

64 12 5
wasineer-dev
braid-mrf

Predicting protein complexes

63 2 0
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