Search Packages

biomcp-python

BioMCP: Biomedical Model Context Protocol

local-deep-research

Local Deep Research achieves ~95% on SimpleQA benchmark (tested with Qwen 3.6). Supports local and cloud LLMs (Ollama, Google, Anthropic, ...). Searches 10+ sources - arXiv, PubMed, web, and your private documents. Everything Local & Encrypted.

pubmed-search-mcp

🔬 Professional MCP server for biomedical literature research — 40 tools, multi-source search (PubMed, Europe PMC, CORE, OpenAlex), full-text access, citation networks, PICO analysis, and more

pubmed-downloader

Automate downloading and processing PubMed in bulk

paperscraper

Tools to scrape publications & their metadata from pubmed, arxiv, medrxiv, biorxiv and chemrxiv.

biomcp-cli

BioMCP: Biomedical Model Context Protocol

pmidcite

Get citation counts for a PubMed paper from the command line

findpapers

Findpapers is an application that helps researchers who are looking for references for their work.

onecite

📚 An intelligent toolkit to automatically parse, complete, and format academic references.

pypubmed

Toolkits for NCBI Pubmed

easy-entrez

Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.

bibtools-pkg

Fetch papers and metadata.

pubmed

Get literature information via PubMed ID, such as the author, title, journal_name, pub_date and so on.

pubmed-xml

Pubmed XML Parser

nalaf

NLP framework in python for entity recognition and relationship extraction

pubrunner

A framework for keeping biomedical text mining result up-to-date

pubmed2

search pubmeds quickly

richcontext-scholapi

Rich Context API integrations for federating discovery services and metadata exchange across multiple scholarly infrastructure providers

pubmedpy

Utilities for interacting with NCBI EUtilities relating to PubMed

pubmed2pdf

A Python package to download PDFs from OA publications in PubMed

pubmed-bibtex

Generate BibTeX Entries for PubMed Publications

pubmed-pdf-downloader

pubmed_pdf_downloader is a Python package that allows users to bulk download PDFs of articles from PubMed Central using PMCIDs.

pybibget

Command line utility to automatically retrieve BibTeX citations from MathSciNet, arXiv, PubMed and doi.org

zotero-keeper

AI-powered research toolkit integrating PubMed search, Zotero management, and VS Code extension with OpenURL institutional access