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biobakery
metaphlan

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

4K 404 91
biobakery
phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

3K 166 36
perf-pip
pepip

🚀 Fast, space-efficient package manager for Python

2K 5 2
biobakery
halla

HAllA: Hierarchical All-against All Association Testing

2K 21 2
rotsl
envguard-tool

macOS-first Python environment orchestration framework — preflight validation, dependency resolution, lock files, and safe managed execution.

520 0 0
biobakery
metawibele

MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome

471 23 3
mateofumis
dumpdork

A powerful command-line tool for Google dorking, enabling users to uncover hidden information and vulnerabilities with advanced search queries.

460 34 6
lykhvar
ppcli

Dynamic CLI tool to manage project-specific commands using pyproject.toml configuration

456 0 0
zbowling
depwise

A fast, comprehensive dependency analyzer for Python that detects unused, missing, and optional dependencies.

360 2 0
eriknyquist
duckargs

Code generation tool, creates python / C programs that parse command line arguments. Say bye to starting each project by reading "argparse" / "geptopt.h" docs.

290 122 4
Ailln
torbjorn

🔨提供一些实用的 Python 装饰器

287 8 0
huaiyu-yang
pyre-tools

通过加载脚本或项目地址,快速导出依赖文件,支持txt和toml格式

263 1 0
VAZlabs
cyber-find

Advanced OSINT tool for searching users across 200+ platforms

241 60 13
Matricess
depcycle

Command-line tool to visualize Python project dependencies.

226 17 0
diyarbagis
flasknetworkbackup

A free open-source Flask app for backup on switches,routers and firewalls.

191 3 0
biobakery
parathaa

Preserving and Assimilating Region-specific Ambiguities in Taxonomic Hierarchical Assignments for Amplicons (Parathaa)

190 3 2
codeswhite
probat

Battery life saver and reminder

184 0 0
biobakery
fugassem

FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes

180 21 2
RicoVZ
socks5man

Socks5man is a Socks5 management tool and Python library

179 12 7
thoth2357
poetryize

💻 Poetryize: A Typer-based CLI tool that converts requirements.txt to pyproject.toml, streamlining Python dependency management with Poetry. Enhances project maintainability through modern tooling integration.

153 17 3
biobakery
baqlava

Bioinformatic Application for Quantification and LAbeling of VirAl taxonomy

114 14 2
agusmakmun
changewords

Simply python tool to change or replace the text string in the files. This tool pretty nice for programmers if somehow they want to replace/change their codes for many files, eg: function, class, variable, etc for recursive files or not.

109 2 0
biobakery
graphlan

High-quality circular representations of taxonomic and phylogenetic trees

107 108 30
shuakami
pyunstuck

A powerful diagnostic tool for analyzing unresponsive Python programs, focusing on deadlocks and blocking issues.

90 0 0
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