Search Packages

pyfaidx

Efficient pythonic random access to fasta subsequences

filtersam

('Tools to filter sam o bam files by percent identity or percent of matched sequence',)

amplicon-coverage-inspector

Visualization of coverage for amplicon sequencing

bamrefine

Small program to mask positions that are likely to result in PMD artifact from a BAM file using a predefined SNP catalog

plasmiduncover

Script to obtain plasmid id from WGS data using bowtie2 to map

yafax

Yet Another FASTA Index and Extraction Tool

bampy

Python implementation of htslib supporting BAM, SAM, and BGZF compression