Sed Ml Python Packages

biosimulators-utils

Utilities for building standardized command-line interfaces for biosimulation software packages

9K 4 6

biosimulators-test-suite

Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators

3K 7 2

kisao

Ontology of algorithms for analyzing biological models, their parameters, and their outputs

3K 12 0

biosimulators-copasi

COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

2K 2 3

biosimulators-tellurium

tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

1K 2 2

biosimulators-amici

AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

1K 3 1

biosimulators-pysces

PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

1K 2 0

biosimulators-gillespy2

GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

1K 2 1

biosimulators-cobrapy

COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

928 2 0

biosimulators-bionetgen

BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

806 1 2

biosimulators-boolnet

BoolNet biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

780 0 0

biomodels

Python library to download and cache models from BioModels

687 2 0

biosimulators-pyneuroml

pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container

661 1 0

biosimulators-cbmpy

CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

653 0 0

biosimulators-xpp

XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

610 0 1

biosimulators-masspy

MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

546 1 0

biosimulators-opencor

OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container

530 0 1

biosimulations-modeldb

Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations

436 0 0

biosimulators-ginsim

GINsim biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

413 0 0

biosimulations-bigg

Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations

297 1 0

biosimulators-rbapy

BioSimulators-compliant command-line interface to the RBApy simulation program.

255 0 0

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